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The good thing about Fraps is that you don't really have to worry about cropping/setting borders or anything. You simply load the program, open up Kega (or whatever it is you want to record) and it'll automatically be ready to capture from that window - so long as you see the frame counter in the corner, you're good to go! No need to crop - you simply set the resolution of your program to whatever you want - windowed, full screen, whatever. So instead of how you'd do it in CamStudio, you could actually record and play the game in Kega's proper full screen mode as opposed to simply maximizing your window.
Ah, thanks Kimble.